PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0169s00280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 353aa    MW: 38675.5 Da    PI: 9.7602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0169s00280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-1659108255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Vradi0169s00280.1  59 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 108
                        899*************************9....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-1855128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-2256129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.04457107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.98E-1559112No hitNo description
PfamPF000102.5E-1359108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1263113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSVAGKTSCH LNAAGERPSQ NLTRRRCLSQ FPIWVSLFPP KVVVVIADGK AIDKASAIRS  60
KHSVTEQRRR SKINERFQIL RDLIPHSDQK RDTASFLLEV IEYVQYLQEK VQKYEGSYPG  120
WGQEPSKLMP WRNSHWRVQS FAGQPSALKN GLGTVSPFPG KFDESSVSIS PTMLSGTQNT  180
IDPDQSRDIV NKTAERQPDL VSKGIPLPLP MHSNISIPVR SDGVLAHPLQ GTVSDAQSTE  240
CPTTSEPQNQ QDELTGSSKG WTAIAHITPF SPSLLLNNLT QALQSAGLDL SQASISVQIN  300
LGKRANRGLS CGTSSPKNHD NPLSNNQTIA HFRDAGSGED SDQTQKRMKT YK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935380.0BT093538.1 Soybean clone JCVI-FLGm-24O13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523559.10.0PREDICTED: transcription factor BIM2 isoform X1
SwissprotQ9CAA45e-95BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0S3T2030.0A0A0S3T203_PHAAN; Uncharacterized protein
STRINGGLYMA02G13670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-96BES1-interacting Myc-like protein 2